Checks by Importance

This section lists the available checks organized by their importance level.

CRITICAL (24)

• check_spatial_series_dims()

• check_units_table_has_spikes()

• check_spike_times_not_in_samples()

• check_electrical_series_dims()

• check_spike_times_without_nans()

• check_ascending_spike_times()

• check_units_table_duration()

• check_name_slashes()

• check_image_series_external_file_valid()

• check_session_start_time_future_date()

• check_subject_exists()

• check_subject_age()

• check_subject_id_exists()

• check_subject_weight()

• check_subject_sex()

• check_roi_response_series_dims()

• check_dynamic_table_region_data_validity()

• check_time_intervals_start_time_not_constant()

• check_ids_unique()

• check_time_intervals_duration()

• check_data_orientation()

• check_timestamps_match_first_dimension()

• check_rate_is_not_zero()

• check_rate_is_positive()

BEST PRACTICE VIOLATION (44)

• check_compass_direction_unit()

• check_spatial_series_radians_magnitude()

• check_spatial_series_degrees_magnitude()

• check_spatial_series_unit()

• check_negative_spike_times()

• check_units_resolution_is_set()

• check_units_resolution_is_valid()

• check_electrical_series_reference_electrodes_table()

• check_spike_times_not_in_unobserved_interval()

• check_electrical_series_unscaled_data()

• check_electrodes_location_allen_ccf()

• check_intracellular_electrode_cell_id_exists()

• check_sweeptable_deprecated()

• check_intracellular_electrode_location_allen_ccf()

• check_image_series_external_file_relative()

• check_image_series_data_size()

• check_image_series_starting_frame_without_external_file()

• check_order_of_images_unique()

• check_order_of_images_len()

• check_index_series_points_to_image()

• check_large_dataset_compression()

• check_publication_list_format()

• check_subject_species_exists()

• check_subject_species_form()

• check_session_id_no_slashes()

• check_subject_id_no_slashes()

• check_optogenetic_stimulus_site_has_optogenetic_series()

• check_roi_response_series_link_to_plane_segmentation()

• check_emission_lambda_in_nm()

• check_excitation_lambda_in_nm()

• check_plane_segmentation_image_mask_shape_against_ref_images()

• check_imaging_plane_location_allen_ccf()

• check_empty_table()

• check_time_interval_time_columns()

• check_time_intervals_stop_after_start()

• check_table_values_for_dict()

• check_regular_timestamps()

• check_timestamps_ascending()

• check_timestamps_without_nans()

• check_missing_unit()

• check_resolution()

• check_time_series_duration()

• check_time_series_data_is_not_empty()

• check_rate_not_below_threshold()

BEST PRACTICE SUGGESTION (20)

• check_name_colons()

• check_description()

• check_small_dataset_compression()

• check_empty_string_for_optional_attribute()

• check_session_start_time_old_date()

• check_experimenter_exists()

• check_experimenter_form()

• check_experiment_description()

• check_institution()

• check_keywords()

• check_doi_publications()

• check_subject_proper_age_range()

• check_subject_age_reference()

• check_processing_module_name()

• check_file_extension()

• check_column_binary_capability()

• check_single_row()

• check_col_not_nan()

• check_table_time_columns_are_not_negative()

• check_timestamp_of_the_first_sample_is_not_negative()